Without re-reading them all, i think some of these might interest you

Hurt Jensen

Mornings and Late Nights Under Overcast Sky
http://super-real.livejournal.com/107767.html

Twenty Minutes to Jaded
http://padacklesrps.livejournal.com/408539.html

In a Mirror Distorted and Indistinct
http://felisblanco.livejournal.com/672910.html

Special Appearance
http://super-real.livejournal.com/1125197.html

Plane Crash Verse - Part 2 contains what you're after. It's so worth reading both parts, one of my favorites
http://angels3.livejournal.com/61847.html or http://www.sinful-desire.org/archive/viewseries.php?seriesid=175

Hurt Jared

A Lesson a Day Could Kills you
http://www.sinful-desire.org/archive/viewstory.php?sid=2329&warning=5

The Billionaire's Reluctant Husband
http://www.sinful-desire.org/archive/viewstory.php?sid=2402&warning=5

Keeping Up Appearances
http://timehasa-way.livejournal.com/67571.html

Illumination
http://spn-hurtcomfort.livejournal.com/222308.html?thread=1267556#t1267556

Concrete Angel
http://fic-freaknout.livejournal.com/tag/fic:concrete%20angel

All My Love For You
http://lissa-ann.livejournal.com/852786.html

Mismanaged - One of my favourite abused Jared fics
http://mis-managed.livejournal.com/1255.html

enjoy xxx

All This Damage http://raise-a-glass.livejournal.com/1204.html

Emo!Jared Verse http://www.livejournal.com/tools/memories.bml?user=catnthecradle&keyword=RPS%2FVerse%2FEmo%20Jared&filter=all

Snapshots Verse http://www.livejournal.com/tools/memories.bml?user=catnthecradle&keyword=RPS%2FVerse%2FSnapshots&filter=all (abandoned)

Doors Of Time
Part 1 http://felisblanco.livejournal.com/856417.html
Part 2 http://felisblanco.livejournal.com/861982.html

Kosti Verse (http://soncnica.livejournal.com/15372.html)
Jensen gets sent to a camp. Jared is the psychologist there. J2-AU

Abused!Jensen:

Life is like a song by tabbyshhh
http://tabbyshhh.livejournal.com/5124.html
When Jared's family takes Jensen in the boys hit it off right away and everything looks to be going up, as they get older, however, things become more complicated.

Stumbling Towards Something Real by allie_quixotic
http://allie-quixotic.livejournal.com/131922.html
Jensen's having problems; money problems, boyfriend problems, family problems, and he's been choosing to drown these problems in alcohol. Jared meanwhile is facing problems of his own. He's supposed to be planning his wedding but his mind's on anything but matrimonial bliss.

Imprint by mass-hipgnosis
http://mass-hipgnosis.livejournal.com/47148.html
In a world where love at first sight is a documented scientific phenomenon, and potentially lethal, Jared and Jensen still meet for the first time when they've both been chosen for Supernatural; things just go a little differently after that.

Abused!Jared

Shouting Out Loud by blynnk
http://blynnk.livejournal.com/30918.html
Jared and Jensen meet in a college drama class. Art begins to mimic real life when they have to perform a play about domestic abuse and the guys get closer while also learning about the violence that has touched eachother's lives. The death that occurs in this story is referenced in memory only and is not Jared or Jensen.


Both abused:

Rattling Your Locks by infatuated_ink
http://infatuated-ink.livejournal.com/73226.html
Born into slavery, Jared has been trained and used as a pleasure slave ever since he was a teenager. Rare and coveted because of his Alpha status, Jared has always sold to the richest and often cruelest of masters.
His new master, the young but ruthless CEO of TradeMark Entertainment, Jensen Ackles, seems no different. At least, not until Jared stops to wonder what a consummate Alpha male like Ackles would want with another Alpha as his pleasure slave.
Things only get more confusing when Jared arrives at his new master's home and finds that there are no other slaves. He soon learns that Ackles freed all of his father's slaves when he inherited them and has been a vocal supporter and patron of anti-slavery groups since. Jared doesn't know how to reconcile this knowledge with his master's outward coldness, but the more he learns about Ackles, the less he seems to fit into the assumptions that Jared has made about him.

Ain't No Sunshine by allie-quixotic
http://allie-quixotic.livejournal.com/tag/ain%27t+no+sunshine
Jared and Jensen have been punishing each other for a mistake made long ago. How far will one bend and the other break? Can they fix what’s been broken for so long and finally find happiness with each other before it’s too late? Set in the year 2017 in the tropical paradise of Hawaii and the city of Los Angeles, Jared and Jensen struggle to find themselves and their way back to each other.

link for Stumbling Towards Something Real one goes to deleted and purged journal