For #1

Bring the Rain (http://sinestrated.livejournal.com/52944.html)
In a future torn apart by war, Jared and Jensen were two orphans just trying to survive in the filthy slums of Dallas, Texas. But when Jared was kidnapped and nearly sold to a prostitution ring, Jensen signed himself over to the military’s Supersoldier program, effectively giving up his life and his memories so that the government would keep Jared safe. Now, fourteen years later, Scout Padalecki has arrived on a military base in Boulder, Colorado, intent on finding a Supersoldier with hazel-green eyes, but when he meets Captain Ackles, it quickly becomes apparent that things aren’t going to be as easy as he’d hoped. Struggling with his own emotions and a Jensen who doesn’t remember who he is, Jared must find a way to save them both – before the war destroys everything they’ve worked so hard to build.

Gemini Chronicles (http://archiveofourown.org/series/24097)
In the three-thousand years after Terra, humanity flourished in a Golden Age of prosperity and happiness. Until the silicates. With no means to communicate, no method for diplomacy, mankind fought back against the onslaught with all they had, but they were slowly losing the war. On the brink of extinction, man's greatest hope lies with two young men whose extraordinary abilities have shockingly and violently awoken.


For #2
All the way home (http://archiveofourown.org/works/215789)
When his life went to hell, Jensen left Dallas and moved to the small family ranch to start over. It's a lonely, solitary existence until he hires Jared to help out around the place. Jared's a temptation that's hard to resist and Jensen finds himself beginning to live again. But ranching isn't his calling, and Jared's running from some demons of his own; he's not the type to stick around. They're temporary, and Jensen thinks he's fine with that, but letting go has never been so hard to do.