The main one I can think of that might qualify is:

* In a Mirror Distorted and Indistinct (http://archiveofourown.org/series/9363): They keep calling him beautiful. Pretty. “Come on. Look this way. Give us a smile, Jensen.” He smiles and blinks against the flashes, fighting the urge to lower his eyes, to hide the blush burning under layers of makeup. Sweat runs down his back, his hands tremble. He’s not pretty, not beautiful. He’s small and weak and pathetic and one day they’re all gonna figure it out. One day…

Thanks!!
Love that one!!

This one kind of fits your request: Catch Me As I Fall (http://jojothecr-fics.livejournal.com/19240.html) by jojothecr_fics

Thank you!

Sam/Dean

Different As It's Always Been (http://runedgirl.livejournal.com/66274.html) by runedgirl: "On a cold November day in 2015, the demons finally gave up on Earth and went back to hell. The angels left a day later. Sam woke up in the bunker the morning after everything changed feeling exactly the same. It took four years, three weddings, two guinea pigs, and Dean nearly dying for Sam to realize that nothing was the same after all. Especially his feelings for his brother." (I can't remember how substantial the hurt!Dean part of this story was, but I know it was there and this is a great story)

All Things Considered (http://sonofabiscuit77.livejournal.com/46954.html) by sonofabiscuit77: "Two year after Cas declared himself God and “fixed” the world for our favorite hunters, Sam and Dean have settled down into their best impression of domesticity, while Bobby... well, Bobby’s just drinking himself to an even earlier early grave. He’s also gotten himself estranged from the boys after discovering something that not even his ever-patient, ever-tolerant ass is willing to overlook. But family’s still family, and when Sam calls with a desperate plea for help, he can’t say no."

The Year of Letting Go (http://runedgirl.livejournal.com/32053.html) by runedgirl: "A hunt gone wrong leaves Dean Winchester barely alive, and helpless for the first time in his life. Can Dean let go of his need to be the big brother and let Sam help him heal, or will the complicated feelings both brothers have been hiding from each other pull them further apart than ever? As Dean’s deal comes due, both Sam and Dean will have to let go of their fears, or face losing each other forever."

Dark Side of the Moon (http://fleshflutter.livejournal.com/11169.html) by fleshflutter: "Cursed!Dean is deaf and blind. Sam deals."

Sam/Dean AU

No Place But Here (http://archiveofourown.org/works/296479/chapters/474877) by saucyminx: "An accident on a camping trip leaves Dean under Sam's watchful eye. Dean's injuries are serious enough that he needs to remain in Sam's cabin while he heals. While they discover how different they are, they discover feelings for one another."

J2

Just One Breath (http://archiveofourown.org/series/16663) Verse: "Jensen sacrifices like Dean. Jared angsts like Sam."

J2 AU

Beholder (http://sandymg.livejournal.com/37314.html) by sandymg: "ared was passionate about the work he did with the animal shelter. Between that and living with Sandy, life was satisfactory. Until the cold night that the filthy, homeless man hidden in an oversized hoodie was dumped at the shelter and Jared couldn't just turn him out. Even if the man roared and called himself 'Beast.' Because under the hood, Jared was sure he caught a glimpse of a prince in those green eyes."

Gunpoint (http://archiveofourown.org/works/861978/chapters/1652215) by felisblanco: "Jensen got his childhood stolen away from him when he was ten years old. Along with his memory, his voice and every emotion that wasn’t fear, hatred or anger. Question is, can Jared help him get any of it back? And more importantly, does Jensen really want him to?"

FRAGILE - Handle with Care (http://archiveofourown.org/works/1106757) by cleflink: "Katie didn't freeze so much as slide into a deliberate stillness. "You… walked into a door," she repeated slowly." (this one isn't so much seriously hurt Jensen as it is misunderstanding and humor, but I loved it so I thought I'd rec it anyway :) )

In From the Cold (http://archiveofourown.org/works/449210) by ladyjanelly: "One thing about working in a free clinic, Jared thinks, is that work is never boring. You never know what'll come in from the cold on a night like this."

Edited 2015-06-22 02:14 pm (UTC)

Thank you!!

This one probably hits your request head-on in terms of theme, but genre-wise it might not be as hurt/comfort-y as you were hoping for?

Fragile (http://dragonspell.livejournal.com/112201.html) by dragonspell
"Ever since Dean came back from Hell, Sam’s been forcibly reminded of just how much bigger and stronger Sam’s gotten. How…fragile Dean is." [S4. Dean likes to pretend he's the stronger one. But Sam knows just how fragile Dean can be on the inside. Now he just wants the outside to match.]

Edited 2015-06-22 09:56 pm (UTC)

Sweet Surrender (http://sinnerforhire.livejournal.com/364293.html)
Jensen overworked to the point of collapse, with some kind of health problem he keeps from everybody but Jared, and the more woobie/sleepy Jensen in need of snuggles, the better

For the End of My Broken Heart (http://samdean.archive.nu/viewstory.php?sid=976&textsize=0&chapter=1)
After the accident at the end of Season 1, John leaves Sam to pick up the pieces and put Dean back together again.

Perchance to Dream (http://sasha-dragon.livejournal.com/20827.html)
While filming the episode The End, Jensen becomes exhausted, it’s up to Jared to look after him when he comes home.

I never believed in love spells or magic until I saw a testimony about one woman called Helina on the internet testifying about how a spell caster called DR KALA of (kalalovespell@gmail.com) bring back her ex husband who left her for another woman, and i decided to contact the man to give him a try. So when i contacted him he told me that he is going to bring my husband back to me that i should give him two days to do the casting of my spell which i did. I am out here to testify that what DR KALA did for me really work out good for me because I am really happy now with my husband because after i contacted DR KALA he promise to bring back my husband to me which he did. So i really don't have much to say about this man but all i have to say is that DR KALA is really a powerful man and could help cast spells to bring back one's, lost, misbehaving lover. I'm now happy and testifying the good work of Dr Kala because i am now leaving happily with my family. So if you need any help from him you can contact him via email: KALALOVESPELL@GMAIL.COM

The Death of Jensen Ackles (http://gilascave.livejournal.com/121786.html) by James
Jensen and Jared are friends-with-benefits until something happens that changes everything.

NOT a deathfic!